{
  "_id": "6a1020b1acfb0bcc41c8bb87",
  "Package": "RAC",
  "Version": "1.5.5",
  "Title": "R Package for Aqua Culture",
  "Authors@R": "c(person(\"Baldan\", \"D.\", role = c(\"aut\", \"cre\"),\nemail = \"damiano.baldan91@gmail.com\"),\nperson(\"Palazzo\", \"D.\", role = \"ctb\"),\nperson(\"Porporato\", \"E.M.D\", role = \"ctb\"),\nperson(\"Brigolin\", \"D.\", role = \"ctb\"))",
  "Maintainer": "Baldan D. <damiano.baldan91@gmail.com>",
  "Encoding": "UTF-8",
  "Description": "Solves the individual bioenergetic balance for different\naquaculture sea fish (Sea Bream and Sea Bass; Brigolin et al.,\n2014 <doi:10.3354/aei00093>) and shellfish (Mussel and Clam;\nBrigolin et al., 2009 <doi:10.1016/j.ecss.2009.01.029>;\nSolidoro et al., 2000 <doi:10.3354/meps199137>). Allows for\nspatialized model runs and population simulations.",
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  "Repository": "https://damianobaldan.r-universe.dev",
  "Date/Publication": "2023-05-02 10:23:59 UTC",
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  "Author": "Baldan D. [aut, cre],\nPalazzo D. [ctb],\nPorporato E.M.D [ctb],\nBrigolin D. [ctb]",
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  "_exports": [
    "Bass_ind_dataloader",
    "Bass_ind_main",
    "Bass_ind_pre",
    "Bass_ind_RKsolver",
    "Bass_ind_skeleton",
    "Bass_pop_dataloader",
    "Bass_pop_main",
    "Bass_pop_pre",
    "Bass_pop_skeleton",
    "Bass_spatial_dataloader",
    "Bass_spatial_main",
    "Bass_spatial_skeleton",
    "Bream_ind_dataloader",
    "Bream_ind_main",
    "Bream_ind_pre",
    "Bream_ind_skeleton",
    "Bream_pop_dataloader",
    "Bream_pop_main",
    "Bream_pop_pre",
    "Bream_pop_skeleton",
    "Bream_spatial_dataloader",
    "Bream_spatial_main",
    "Bream_spatial_skeleton",
    "Clam_ind_dataloader",
    "Clam_ind_main",
    "Clam_ind_pre",
    "Clam_ind_skeleton",
    "Clam_pop_dataloader",
    "Clam_pop_main",
    "Clam_pop_pre",
    "Clam_pop_skeleton",
    "ClamF_ind_dataloader",
    "ClamF_ind_main",
    "ClamF_ind_pre",
    "ClamF_ind_skeleton",
    "ClamF_pop_dataloader",
    "ClamF_pop_main",
    "ClamF_pop_pre",
    "ClamF_pop_skeleton",
    "Mussel_ind_dataloader",
    "Mussel_ind_main",
    "Mussel_ind_pre",
    "Mussel_ind_skeleton",
    "Mussel_pop_dataloader",
    "Mussel_pop_main",
    "Mussel_pop_pre",
    "Mussel_pop_skeleton",
    "Mussel_spatial_dataloader",
    "Mussel_spatial_main",
    "Mussel_spatial_skeleton"
  ],
  "_help": [
    {
      "page": "Bass_ind_dataloader",
      "title": "Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolation",
      "topics": [
        "Bass_ind_dataloader"
      ]
    },
    {
      "page": "Bass_ind_equations",
      "title": "Seabass bioenergetic individual model differential equations",
      "topics": [
        "Bass_ind_equations"
      ]
    },
    {
      "page": "Bass_ind_main",
      "title": "Seabass bioenergetic individual model",
      "topics": [
        "Bass_ind_main"
      ]
    },
    {
      "page": "Bass_ind_post",
      "title": "Seabass bioenergetic individual model postprocessor",
      "topics": [
        "Bass_ind_post"
      ]
    },
    {
      "page": "Bass_ind_pre",
      "title": "Seabass bioenergetic individual model preprocessor",
      "topics": [
        "Bass_ind_pre"
      ]
    },
    {
      "page": "Bass_ind_RKsolver",
      "title": "Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Bass_ind_RKsolver"
      ]
    },
    {
      "page": "Bass_ind_skeleton",
      "title": "Creates the folders structure for Seabass individual bioenergetic model",
      "topics": [
        "Bass_ind_skeleton"
      ]
    },
    {
      "page": "Bass_pop_dataloader",
      "title": "Function that loads forcings data for Seabass population model and performs the interpolation",
      "topics": [
        "Bass_pop_dataloader"
      ]
    },
    {
      "page": "Bass_pop_equations",
      "title": "Seabass bioenergetic population model differential equations",
      "topics": [
        "Bass_pop_equations"
      ]
    },
    {
      "page": "Bass_pop_loop",
      "title": "Function that runs the Monte Carlo simulation for the Seabass population model",
      "topics": [
        "Bass_pop_loop"
      ]
    },
    {
      "page": "Bass_pop_main",
      "title": "Seabass bioenergetic population model",
      "topics": [
        "Bass_pop_main"
      ]
    },
    {
      "page": "Bass_pop_post",
      "title": "Postprocess the Seabass population bioenergetic model results",
      "topics": [
        "Bass_pop_post"
      ]
    },
    {
      "page": "Bass_pop_pre",
      "title": "Seabass bioenergetic population model preprocessor",
      "topics": [
        "Bass_pop_pre"
      ]
    },
    {
      "page": "Bass_pop_RKsolver",
      "title": "Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Bass_pop_RKsolver"
      ]
    },
    {
      "page": "Bass_pop_skeleton",
      "title": "Creates the folders structure for Seabass population model",
      "topics": [
        "Bass_pop_skeleton"
      ]
    },
    {
      "page": "Bass_spatial_dataloader",
      "title": "Function that loads forcings data for Bass spatialized model and performs the interpolation",
      "topics": [
        "Bass_spatial_dataloader"
      ]
    },
    {
      "page": "Bass_spatial_loop",
      "title": "Bass bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Bass_spatial_loop"
      ]
    },
    {
      "page": "Bass_spatial_main",
      "title": "Bass bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Bass_spatial_main"
      ]
    },
    {
      "page": "Bass_spatial_post",
      "title": "Postprocess the Mussel spatialized model results",
      "topics": [
        "Bass_spatial_post"
      ]
    },
    {
      "page": "Bass_spatial_pre",
      "title": "Bass bioenergetic spatialized model preprocessor",
      "topics": [
        "Bass_spatial_pre"
      ]
    },
    {
      "page": "Bass_spatial_pre_int",
      "title": "Bass bioenergetic spatialized model preprocessor - used inside spatialization loop",
      "topics": [
        "Bass_spatial_pre_int"
      ]
    },
    {
      "page": "Bass_spatial_RKsolver",
      "title": "Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model",
      "topics": [
        "Bass_spatial_RKsolver"
      ]
    },
    {
      "page": "Bass_spatial_skeleton",
      "title": "Creates the folders structure for Bass spatialized model",
      "topics": [
        "Bass_spatial_skeleton"
      ]
    },
    {
      "page": "Bream_ind_dataloader",
      "title": "Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolation",
      "topics": [
        "Bream_ind_dataloader"
      ]
    },
    {
      "page": "Bream_ind_equations",
      "title": "Seabream bioenergetic individual model differential equations",
      "topics": [
        "Bream_ind_equations"
      ]
    },
    {
      "page": "Bream_ind_main",
      "title": "Seabream bioenergetic individual model",
      "topics": [
        "Bream_ind_main"
      ]
    },
    {
      "page": "Bream_ind_post",
      "title": "Postprocess the Seabream indivual bioenergetic model results",
      "topics": [
        "Bream_ind_post"
      ]
    },
    {
      "page": "Bream_ind_pre",
      "title": "Seabream bioenergetic individual model preprocessor",
      "topics": [
        "Bream_ind_pre"
      ]
    },
    {
      "page": "Bream_ind_RKsolver",
      "title": "Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Bream_ind_RKsolver"
      ]
    },
    {
      "page": "Bream_ind_skeleton",
      "title": "Creates the folders structure for Seabream individual bioenergetic model",
      "topics": [
        "Bream_ind_skeleton"
      ]
    },
    {
      "page": "Bream_pop_dataloader",
      "title": "Function that loads forcings data for Seabream population model and performs the interpolation",
      "topics": [
        "Bream_pop_dataloader"
      ]
    },
    {
      "page": "Bream_pop_equations",
      "title": "Seabream bioenergetic population model differential equations",
      "topics": [
        "Bream_pop_equations"
      ]
    },
    {
      "page": "Bream_pop_loop",
      "title": "Function that runs the Monte Carlo simulation for the Seabream population model",
      "topics": [
        "Bream_pop_loop"
      ]
    },
    {
      "page": "Bream_pop_main",
      "title": "Seabream bioenergetic population model",
      "topics": [
        "Bream_pop_main"
      ]
    },
    {
      "page": "Bream_pop_post",
      "title": "Postprocess the Bream population bioenergetic model results",
      "topics": [
        "Bream_pop_post"
      ]
    },
    {
      "page": "Bream_pop_pre",
      "title": "Seabream bioenergetic population model preprocessor",
      "topics": [
        "Bream_pop_pre"
      ]
    },
    {
      "page": "Bream_pop_RKsolver",
      "title": "Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Bream_pop_RKsolver"
      ]
    },
    {
      "page": "Bream_pop_skeleton",
      "title": "Creates the folders structure for Seabream population model",
      "topics": [
        "Bream_pop_skeleton"
      ]
    },
    {
      "page": "Bream_spatial_dataloader",
      "title": "Function that loads forcings data for Bream spatialized model and performs the interpolation",
      "topics": [
        "Bream_spatial_dataloader"
      ]
    },
    {
      "page": "Bream_spatial_loop",
      "title": "Bream bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Bream_spatial_loop"
      ]
    },
    {
      "page": "Bream_spatial_main",
      "title": "Bream bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Bream_spatial_main"
      ]
    },
    {
      "page": "Bream_spatial_post",
      "title": "Postprocess the Bream spatialized model results",
      "topics": [
        "Bream_spatial_post"
      ]
    },
    {
      "page": "Bream_spatial_pre",
      "title": "Bream bioenergetic spatialized model preprocessor",
      "topics": [
        "Bream_spatial_pre"
      ]
    },
    {
      "page": "Bream_spatial_pre_int",
      "title": "Bream bioenergetic spatialized model preprocessor - used inside spatialization loop",
      "topics": [
        "Bream_spatial_pre_int"
      ]
    },
    {
      "page": "Bream_spatial_RKsolver",
      "title": "Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model",
      "topics": [
        "Bream_spatial_RKsolver"
      ]
    },
    {
      "page": "Bream_spatial_skeleton",
      "title": "Creates the folders structure for Bream spatialized model",
      "topics": [
        "Bream_spatial_skeleton"
      ]
    },
    {
      "page": "Clam_ind_dataloader",
      "title": "Function that loads forcings data for Clam individual bioenergetic model and performs the interpolation",
      "topics": [
        "Clam_ind_dataloader"
      ]
    },
    {
      "page": "Clam_ind_equations",
      "title": "Clam bioenergetic individual model differential equations",
      "topics": [
        "Clam_ind_equations"
      ]
    },
    {
      "page": "Clam_ind_main",
      "title": "Clam bioenergetic individual model",
      "topics": [
        "Clam_ind_main"
      ]
    },
    {
      "page": "Clam_ind_post",
      "title": "Postprocess the Clam individual bioenergetic model results",
      "topics": [
        "Clam_ind_post"
      ]
    },
    {
      "page": "Clam_ind_pre",
      "title": "Clam bioenergetic individual model preprocessor",
      "topics": [
        "Clam_ind_pre"
      ]
    },
    {
      "page": "clam_ind_RKsolver",
      "title": "Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "clam_ind_RKsolver"
      ]
    },
    {
      "page": "Clam_ind_skeleton",
      "title": "Creates the folders structure for Clam individual bioenergetic model",
      "topics": [
        "Clam_ind_skeleton"
      ]
    },
    {
      "page": "Clam_pop_dataloader",
      "title": "Function that loads forcings data for Clam population model and performs the interpolation",
      "topics": [
        "Clam_pop_dataloader"
      ]
    },
    {
      "page": "Clam_pop_equations",
      "title": "Clam bioenergetic population model differential equations",
      "topics": [
        "Clam_pop_equations"
      ]
    },
    {
      "page": "Clam_pop_loop",
      "title": "Function that runs the Monte Carlo simulation for the Clam population model",
      "topics": [
        "Clam_pop_loop"
      ]
    },
    {
      "page": "Clam_pop_main",
      "title": "Clam bioenergetic population model",
      "topics": [
        "Clam_pop_main"
      ]
    },
    {
      "page": "Clam_pop_post",
      "title": "Postprocess the Clam population bioenergetic model results",
      "topics": [
        "Clam_pop_post"
      ]
    },
    {
      "page": "Clam_pop_pre",
      "title": "Clam bioenergetic population model preprocessor",
      "topics": [
        "Clam_pop_pre"
      ]
    },
    {
      "page": "Clam_pop_RKsolver",
      "title": "Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta method",
      "topics": [
        "Clam_pop_RKsolver"
      ]
    },
    {
      "page": "Clam_pop_skeleton",
      "title": "Creates the folders structure for Clam population model",
      "topics": [
        "Clam_pop_skeleton"
      ]
    },
    {
      "page": "ClamF_ind_dataloader",
      "title": "Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolation",
      "topics": [
        "ClamF_ind_dataloader"
      ]
    },
    {
      "page": "ClamF_ind_equations",
      "title": "Clam bioenergetic individual model differential equations (alternative version)",
      "topics": [
        "ClamF_ind_equations"
      ]
    },
    {
      "page": "ClamF_ind_main",
      "title": "Clam bioenergetic individual model (alternative version)",
      "topics": [
        "ClamF_ind_main"
      ]
    },
    {
      "page": "ClamF_ind_post",
      "title": "Postprocess the Clam indivual bioenergetic model (alternative version) results",
      "topics": [
        "ClamF_ind_post"
      ]
    },
    {
      "page": "ClamF_ind_pre",
      "title": "Clam bioenergetic individual model preprocessor (alternativer version)",
      "topics": [
        "ClamF_ind_pre"
      ]
    },
    {
      "page": "ClamF_ind_RKsolver",
      "title": "Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method",
      "topics": [
        "ClamF_ind_RKsolver"
      ]
    },
    {
      "page": "ClamF_ind_skeleton",
      "title": "Creates the folders structure for Clam individual bioenergetic model (alternative version)",
      "topics": [
        "ClamF_ind_skeleton"
      ]
    },
    {
      "page": "ClamF_pop_dataloader",
      "title": "Function that loads forcings data for Clam population model (alternative version) and performs the interpolation",
      "topics": [
        "ClamF_pop_dataloader"
      ]
    },
    {
      "page": "ClamF_pop_equations",
      "title": "Clam bioenergetic population model differential equations (alternative version)",
      "topics": [
        "ClamF_pop_equations"
      ]
    },
    {
      "page": "ClamF_pop_loop",
      "title": "Function that runs the Monte Carlo simulation for the Clam population model (alternative version)",
      "topics": [
        "ClamF_pop_loop"
      ]
    },
    {
      "page": "ClamF_pop_main",
      "title": "Clam bioenergetic population model (alternative version)",
      "topics": [
        "ClamF_pop_main"
      ]
    },
    {
      "page": "ClamF_pop_post",
      "title": "Postprocess the Clam population bioenergetic model results (alternative model)",
      "topics": [
        "ClamF_pop_post"
      ]
    },
    {
      "page": "ClamF_pop_pre",
      "title": "Clam bioenergetic population model (alternative version) preprocessor",
      "topics": [
        "ClamF_pop_pre"
      ]
    },
    {
      "page": "ClamF_pop_RKsolver",
      "title": "Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method",
      "topics": [
        "ClamF_pop_RKsolver"
      ]
    },
    {
      "page": "ClamF_pop_skeleton",
      "title": "Creates the folders structure for Clam population model (alternative version)",
      "topics": [
        "ClamF_pop_skeleton"
      ]
    },
    {
      "page": "Mussel_ind_dataloader",
      "title": "Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolation",
      "topics": [
        "Mussel_ind_dataloader"
      ]
    },
    {
      "page": "Mussel_ind_equations",
      "title": "Mussel bioenergetic individual model differential equations",
      "topics": [
        "Mussel_ind_equations"
      ]
    },
    {
      "page": "Mussel_ind_main",
      "title": "Mussel bioenergetic individual model",
      "topics": [
        "Mussel_ind_main"
      ]
    },
    {
      "page": "Mussel_ind_post",
      "title": "Postprocess the Mussel indivual bioenergetic model results",
      "topics": [
        "Mussel_ind_post"
      ]
    },
    {
      "page": "Mussel_ind_pre",
      "title": "Mussel bioenergetic individual model preprocessor",
      "topics": [
        "Mussel_ind_pre"
      ]
    },
    {
      "page": "Mussel_ind_RKsolver",
      "title": "Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Mussel_ind_RKsolver"
      ]
    },
    {
      "page": "Mussel_ind_skeleton",
      "title": "Creates the folders structure for Mussel individual bioenergetic model",
      "topics": [
        "Mussel_ind_skeleton"
      ]
    },
    {
      "page": "Mussel_pop_dataloader",
      "title": "Function that loads forcings data for Mussel population model and performs the interpolation",
      "topics": [
        "Mussel_pop_dataloader"
      ]
    },
    {
      "page": "Mussel_pop_equations",
      "title": "Mussel bioenergetic population model differential equations",
      "topics": [
        "Mussel_pop_equations"
      ]
    },
    {
      "page": "Mussel_pop_loop",
      "title": "Function that runs the Monte Carlo simulation for the Mussel population model",
      "topics": [
        "Mussel_pop_loop"
      ]
    },
    {
      "page": "Mussel_pop_main",
      "title": "Mussel bioenergetic population model",
      "topics": [
        "Mussel_pop_main"
      ]
    },
    {
      "page": "Mussel_pop_post",
      "title": "Postprocess the Mussel population bioenergetic model results",
      "topics": [
        "Mussel_pop_post"
      ]
    },
    {
      "page": "Mussel_pop_pre",
      "title": "Mussel bioenergetic population model preprocessor",
      "topics": [
        "Mussel_pop_pre"
      ]
    },
    {
      "page": "Mussel_pop_RKsolver",
      "title": "Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta method",
      "topics": [
        "Mussel_pop_RKsolver"
      ]
    },
    {
      "page": "Mussel_pop_skeleton",
      "title": "Creates the folders structure for Mussel population model",
      "topics": [
        "Mussel_pop_skeleton"
      ]
    },
    {
      "page": "Mussel_spatial_dataloader",
      "title": "Function that loads forcings data for Mussel spatialized model and performs the interpolation",
      "topics": [
        "Mussel_spatial_dataloader"
      ]
    },
    {
      "page": "Mussel_spatial_loop",
      "title": "Mussel bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Mussel_spatial_loop"
      ]
    },
    {
      "page": "Mussel_spatial_main",
      "title": "Mussel bioenergetic spatialized model - spatialization loop",
      "topics": [
        "Mussel_spatial_main"
      ]
    },
    {
      "page": "Mussel_spatial_post",
      "title": "Postprocess the Mussel spatialized model results",
      "topics": [
        "Mussel_spatial_post"
      ]
    },
    {
      "page": "Mussel_spatial_pre",
      "title": "Mussel bioenergetic spatialized model preprocessor",
      "topics": [
        "Mussel_spatial_pre"
      ]
    },
    {
      "page": "Mussel_spatial_pre_int",
      "title": "Mussel bioenergetic spatialized model preprocessor - used inside spatialization loop",
      "topics": [
        "Mussel_spatial_pre_int"
      ]
    },
    {
      "page": "Mussel_spatial_RKsolver",
      "title": "Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model",
      "topics": [
        "Mussel_spatial_RKsolver"
      ]
    },
    {
      "page": "Mussel_spatial_skeleton",
      "title": "Creates the folders structure for Mussel spatialized model",
      "topics": [
        "Mussel_spatial_skeleton"
      ]
    },
    {
      "page": "Pop_fun",
      "title": "Function that solves the population dynamics equations including discontinuities",
      "topics": [
        "Pop_fun"
      ]
    }
  ],
  "_readme": "https://github.com/damianobaldan/rac/raw/HEAD/README.md",
  "_rundeps": [
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    "matrixStats",
    "plotrix",
    "raster",
    "Rcpp",
    "rstudioapi",
    "sp",
    "terra"
  ],
  "_vignettes": [
    {
      "source": "RAC.Rmd",
      "filename": "RAC.html",
      "title": "RAC",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2023-05-02 10:23:36",
      "modified": "2023-05-02 10:23:36",
      "commits": 1
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  "_score": 4.544068044350276,
  "_indexed": true,
  "_nocasepkg": "rac",
  "_universes": [
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}