Package: riverconn 0.3.33

riverconn: Fragmentation and Connectivity Indices for Riverscapes

Indices for assessing riverscape fragmentation, including the Dendritic Connectivity Index, the Population Connectivity Index, the River Fragmentation Index, the Probability of Connectivity, and the Integral Index of connectivity. For a review, see Jumani et al. (2020) <doi:10.1088/1748-9326/abcb37> and Baldan et al. (2022) <doi:10.1016/j.envsoft.2022.105470> Functions to calculate temporal indices improvement when fragmentation due to barriers is reduced are also included.

Authors:Damiano Baldan [aut, cre], David Cunillera-Montcusi [ctb], Andrea Funk [ctb]

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riverconn.pdf |riverconn.html✨
riverconn/json (API)

# Install 'riverconn' in R:

install.packages('riverconn', repos = c('https://damianobaldan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/damianobaldan/riverconn/issues

On CRAN:

5.46 score 8 stars 24 scripts 215 downloads 9 exports 62 dependencies

Last updated 8 months agofrom:67d76a9d00. Checks:OK: 1 WARNING: 5 ERROR: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 29 2024
R-4.5-win	ERROR	Oct 29 2024
R-4.5-linux	WARNING	Oct 29 2024
R-4.4-win	WARNING	Oct 29 2024
R-4.4-mac	WARNING	Oct 29 2024
R-4.3-win	WARNING	Oct 29 2024
R-4.3-mac	WARNING	Oct 29 2024

Exports:%>%B_ij_fun c_ij_fun d_index_calculation index_calculation set_graph_directionality t_index_calculation t_passability_sequencer t_weights_sequencer

Dependencies:askpass cachem callr cli codetools cpp11 crsmeta curl digest dodgr doParallel dplyr fansi fastmap foreach fs generics glue httr httr2 igraph iterators jsonlite lattice lifecycle lubridate magrittr Matrix memoise mime openssl osmdata pillar pkgconfig plyr processx PROJ proj4 ps purrr R6 rappdirs Rcpp RcppParallel RcppThread reproj reshape2 rlang rvest selectr stringi stringr sys tibble tidyr tidyselect timechange utf8 vctrs withr wk xml2

riverconn vignette

Damiano Baldan

Rendered fromTutorial.Rmdusingknitr::rmarkdownon Oct 29 2024.

Last update: 2023-12-07
Started: 2021-12-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculates B_ij: the functional contribution to dispersal probability I_ij	B_ij_fun
Calculates c_ij: the structural contribution to the dispersal probability I_ij	c_ij_fun
Calculate Reach- and Catchment-scale index improvement for scenarios of barriers removal	d_index_calculation
Reach- and Catchment-scale indices of connectivity	index_calculation
Create directed river graph based on outlet flag	set_graph_directionality
Calculates time-dependent index when nodes weights or barriers passability are changing	t_index_calculation
Create the time-dependent metadata for barriers	t_passability_sequencer
Create the time-dependent weights data	t_weights_sequencer