Package: RAC 1.5.5

RAC: R Package for Aqua Culture

Solves the individual bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass; Brigolin et al., 2014 <doi:10.3354/aei00093>) and shellfish (Mussel and Clam; Brigolin et al., 2009 <doi:10.1016/j.ecss.2009.01.029>; Solidoro et al., 2000 <doi:10.3354/meps199137>). Allows for spatialized model runs and population simulations.

Authors:Baldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]

RAC_1.5.5.tar.gz
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RAC_1.5.5.tgz(r-4.4-any)RAC_1.5.5.tgz(r-4.3-any)
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RAC.pdf |RAC.html✨
RAC/json (API)

# Install 'RAC' in R:
install.packages('RAC', repos = c('https://damianobaldan.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/damianobaldan/rac/issues

On CRAN:

50 exports 2.06 score 8 dependencies 7 mentions 176 downloads

Last updated 1 years agofrom:44ce8ea41d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 25 2024
R-4.5-winOKAug 25 2024
R-4.5-linuxOKAug 25 2024
R-4.4-winOKAug 25 2024
R-4.4-macOKAug 25 2024
R-4.3-winOKAug 25 2024
R-4.3-macOKAug 25 2024

Exports:Bass_ind_dataloaderBass_ind_mainBass_ind_preBass_ind_RKsolverBass_ind_skeletonBass_pop_dataloaderBass_pop_mainBass_pop_preBass_pop_skeletonBass_spatial_dataloaderBass_spatial_mainBass_spatial_skeletonBream_ind_dataloaderBream_ind_mainBream_ind_preBream_ind_skeletonBream_pop_dataloaderBream_pop_mainBream_pop_preBream_pop_skeletonBream_spatial_dataloaderBream_spatial_mainBream_spatial_skeletonClam_ind_dataloaderClam_ind_mainClam_ind_preClam_ind_skeletonClam_pop_dataloaderClam_pop_mainClam_pop_preClam_pop_skeletonClamF_ind_dataloaderClamF_ind_mainClamF_ind_preClamF_ind_skeletonClamF_pop_dataloaderClamF_pop_mainClamF_pop_preClamF_pop_skeletonMussel_ind_dataloaderMussel_ind_mainMussel_ind_preMussel_ind_skeletonMussel_pop_dataloaderMussel_pop_mainMussel_pop_preMussel_pop_skeletonMussel_spatial_dataloaderMussel_spatial_mainMussel_spatial_skeleton

Dependencies:latticematrixStatsplotrixrasterRcpprstudioapispterra

RAC

Rendered fromRAC.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2023-05-02
Started: 2023-05-02

Readme and manuals

Help Manual

Help pageTopics
Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolationBass_ind_dataloader
Seabass bioenergetic individual model differential equationsBass_ind_equations
Seabass bioenergetic individual modelBass_ind_main
Seabass bioenergetic individual model postprocessorBass_ind_post
Seabass bioenergetic individual model preprocessorBass_ind_pre
Solves the Seabass bioenergetic balance with a 4th order Runge Kutta methodBass_ind_RKsolver
Creates the folders structure for Seabass individual bioenergetic modelBass_ind_skeleton
Function that loads forcings data for Seabass population model and performs the interpolationBass_pop_dataloader
Seabass bioenergetic population model differential equationsBass_pop_equations
Function that runs the Monte Carlo simulation for the Seabass population modelBass_pop_loop
Seabass bioenergetic population modelBass_pop_main
Postprocess the Seabass population bioenergetic model resultsBass_pop_post
Seabass bioenergetic population model preprocessorBass_pop_pre
Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta methodBass_pop_RKsolver
Creates the folders structure for Seabass population modelBass_pop_skeleton
Function that loads forcings data for Bass spatialized model and performs the interpolationBass_spatial_dataloader
Bass bioenergetic spatialized model - spatialization loopBass_spatial_loop
Bass bioenergetic spatialized model - spatialization loopBass_spatial_main
Postprocess the Mussel spatialized model resultsBass_spatial_post
Bass bioenergetic spatialized model preprocessorBass_spatial_pre
Bass bioenergetic spatialized model preprocessor - used inside spatialization loopBass_spatial_pre_int
Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized modelBass_spatial_RKsolver
Creates the folders structure for Bass spatialized modelBass_spatial_skeleton
Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolationBream_ind_dataloader
Seabream bioenergetic individual model differential equationsBream_ind_equations
Seabream bioenergetic individual modelBream_ind_main
Postprocess the Seabream indivual bioenergetic model resultsBream_ind_post
Seabream bioenergetic individual model preprocessorBream_ind_pre
Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta methodBream_ind_RKsolver
Creates the folders structure for Seabream individual bioenergetic modelBream_ind_skeleton
Function that loads forcings data for Seabream population model and performs the interpolationBream_pop_dataloader
Seabream bioenergetic population model differential equationsBream_pop_equations
Function that runs the Monte Carlo simulation for the Seabream population modelBream_pop_loop
Seabream bioenergetic population modelBream_pop_main
Postprocess the Bream population bioenergetic model resultsBream_pop_post
Seabream bioenergetic population model preprocessorBream_pop_pre
Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta methodBream_pop_RKsolver
Creates the folders structure for Seabream population modelBream_pop_skeleton
Function that loads forcings data for Bream spatialized model and performs the interpolationBream_spatial_dataloader
Bream bioenergetic spatialized model - spatialization loopBream_spatial_loop
Bream bioenergetic spatialized model - spatialization loopBream_spatial_main
Postprocess the Bream spatialized model resultsBream_spatial_post
Bream bioenergetic spatialized model preprocessorBream_spatial_pre
Bream bioenergetic spatialized model preprocessor - used inside spatialization loopBream_spatial_pre_int
Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized modelBream_spatial_RKsolver
Creates the folders structure for Bream spatialized modelBream_spatial_skeleton
Function that loads forcings data for Clam individual bioenergetic model and performs the interpolationClam_ind_dataloader
Clam bioenergetic individual model differential equationsClam_ind_equations
Clam bioenergetic individual modelClam_ind_main
Postprocess the Clam individual bioenergetic model resultsClam_ind_post
Clam bioenergetic individual model preprocessorClam_ind_pre
Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta methodclam_ind_RKsolver
Creates the folders structure for Clam individual bioenergetic modelClam_ind_skeleton
Function that loads forcings data for Clam population model and performs the interpolationClam_pop_dataloader
Clam bioenergetic population model differential equationsClam_pop_equations
Function that runs the Monte Carlo simulation for the Clam population modelClam_pop_loop
Clam bioenergetic population modelClam_pop_main
Postprocess the Clam population bioenergetic model resultsClam_pop_post
Clam bioenergetic population model preprocessorClam_pop_pre
Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta methodClam_pop_RKsolver
Creates the folders structure for Clam population modelClam_pop_skeleton
Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolationClamF_ind_dataloader
Clam bioenergetic individual model differential equations (alternative version)ClamF_ind_equations
Clam bioenergetic individual model (alternative version)ClamF_ind_main
Postprocess the Clam indivual bioenergetic model (alternative version) resultsClamF_ind_post
Clam bioenergetic individual model preprocessor (alternativer version)ClamF_ind_pre
Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta methodClamF_ind_RKsolver
Creates the folders structure for Clam individual bioenergetic model (alternative version)ClamF_ind_skeleton
Function that loads forcings data for Clam population model (alternative version) and performs the interpolationClamF_pop_dataloader
Clam bioenergetic population model differential equations (alternative version)ClamF_pop_equations
Function that runs the Monte Carlo simulation for the Clam population model (alternative version)ClamF_pop_loop
Clam bioenergetic population model (alternative version)ClamF_pop_main
Postprocess the Clam population bioenergetic model results (alternative model)ClamF_pop_post
Clam bioenergetic population model (alternative version) preprocessorClamF_pop_pre
Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta methodClamF_pop_RKsolver
Creates the folders structure for Clam population model (alternative version)ClamF_pop_skeleton
Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolationMussel_ind_dataloader
Mussel bioenergetic individual model differential equationsMussel_ind_equations
Mussel bioenergetic individual modelMussel_ind_main
Postprocess the Mussel indivual bioenergetic model resultsMussel_ind_post
Mussel bioenergetic individual model preprocessorMussel_ind_pre
Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta methodMussel_ind_RKsolver
Creates the folders structure for Mussel individual bioenergetic modelMussel_ind_skeleton
Function that loads forcings data for Mussel population model and performs the interpolationMussel_pop_dataloader
Mussel bioenergetic population model differential equationsMussel_pop_equations
Function that runs the Monte Carlo simulation for the Mussel population modelMussel_pop_loop
Mussel bioenergetic population modelMussel_pop_main
Postprocess the Mussel population bioenergetic model resultsMussel_pop_post
Mussel bioenergetic population model preprocessorMussel_pop_pre
Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta methodMussel_pop_RKsolver
Creates the folders structure for Mussel population modelMussel_pop_skeleton
Function that loads forcings data for Mussel spatialized model and performs the interpolationMussel_spatial_dataloader
Mussel bioenergetic spatialized model - spatialization loopMussel_spatial_loop
Mussel bioenergetic spatialized model - spatialization loopMussel_spatial_main
Postprocess the Mussel spatialized model resultsMussel_spatial_post
Mussel bioenergetic spatialized model preprocessorMussel_spatial_pre
Mussel bioenergetic spatialized model preprocessor - used inside spatialization loopMussel_spatial_pre_int
Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized modelMussel_spatial_RKsolver
Creates the folders structure for Mussel spatialized modelMussel_spatial_skeleton
Function that solves the population dynamics equations including discontinuitiesPop_fun