Package: RAC 1.5.5

RAC: R Package for Aqua Culture

Solves the individual bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass; Brigolin et al., 2014 <doi:10.3354/aei00093>) and shellfish (Mussel and Clam; Brigolin et al., 2009 <doi:10.1016/j.ecss.2009.01.029>; Solidoro et al., 2000 <doi:10.3354/meps199137>). Allows for spatialized model runs and population simulations.

Authors:Baldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]

RAC_1.5.5.tar.gz
RAC_1.5.5.zip(r-4.7-any)RAC_1.5.5.zip(r-4.6-any)RAC_1.5.5.zip(r-4.5-any)
RAC_1.5.5.tgz(r-4.6-any)RAC_1.5.5.tgz(r-4.5-any)
RAC_1.5.5.tar.gz(r-4.7-any)RAC_1.5.5.tar.gz(r-4.6-any)
RAC_1.5.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RAC/json (API)

# Install 'RAC' in R:

install.packages('RAC', repos = c('https://damianobaldan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/damianobaldan/rac/issues

On CRAN:

4.54 score 1 stars 353 downloads 7 mentions 50 exports 8 dependencies

Last updated from:44ce8ea41d. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	271
source / vignettes	OK	232
linux-release	OK	220
macos-release	OK	151
macos-oldrel	OK	146
windows-devel	OK	201
windows-release	OK	204
windows-oldrel	OK	191
wasm-release	OK	130

Exports:Bass_ind_dataloader Bass_ind_main Bass_ind_pre Bass_ind_RKsolver Bass_ind_skeleton Bass_pop_dataloader Bass_pop_main Bass_pop_pre Bass_pop_skeleton Bass_spatial_dataloader Bass_spatial_main Bass_spatial_skeleton Bream_ind_dataloader Bream_ind_main Bream_ind_pre Bream_ind_skeleton Bream_pop_dataloader Bream_pop_main Bream_pop_pre Bream_pop_skeleton Bream_spatial_dataloader Bream_spatial_main Bream_spatial_skeleton Clam_ind_dataloader Clam_ind_main Clam_ind_pre Clam_ind_skeleton Clam_pop_dataloader Clam_pop_main Clam_pop_pre Clam_pop_skeleton ClamF_ind_dataloader ClamF_ind_main ClamF_ind_pre ClamF_ind_skeleton ClamF_pop_dataloader ClamF_pop_main ClamF_pop_pre ClamF_pop_skeleton Mussel_ind_dataloader Mussel_ind_main Mussel_ind_pre Mussel_ind_skeleton Mussel_pop_dataloader Mussel_pop_main Mussel_pop_pre Mussel_pop_skeleton Mussel_spatial_dataloader Mussel_spatial_main Mussel_spatial_skeleton

Dependencies:lattice matrixStats plotrix raster Rcpp rstudioapi sp terra

RAC

Rendered fromRAC.Rmdusingknitr::rmarkdown

Last update: 2023-05-02
Started: 2023-05-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolation	Bass_ind_dataloader
Seabass bioenergetic individual model differential equations	Bass_ind_equations
Seabass bioenergetic individual model	Bass_ind_main
Seabass bioenergetic individual model postprocessor	Bass_ind_post
Seabass bioenergetic individual model preprocessor	Bass_ind_pre
Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method	Bass_ind_RKsolver
Creates the folders structure for Seabass individual bioenergetic model	Bass_ind_skeleton
Function that loads forcings data for Seabass population model and performs the interpolation	Bass_pop_dataloader
Seabass bioenergetic population model differential equations	Bass_pop_equations
Function that runs the Monte Carlo simulation for the Seabass population model	Bass_pop_loop
Seabass bioenergetic population model	Bass_pop_main
Postprocess the Seabass population bioenergetic model results	Bass_pop_post
Seabass bioenergetic population model preprocessor	Bass_pop_pre
Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta method	Bass_pop_RKsolver
Creates the folders structure for Seabass population model	Bass_pop_skeleton
Function that loads forcings data for Bass spatialized model and performs the interpolation	Bass_spatial_dataloader
Bass bioenergetic spatialized model - spatialization loop	Bass_spatial_loop
Bass bioenergetic spatialized model - spatialization loop	Bass_spatial_main
Postprocess the Mussel spatialized model results	Bass_spatial_post
Bass bioenergetic spatialized model preprocessor	Bass_spatial_pre
Bass bioenergetic spatialized model preprocessor - used inside spatialization loop	Bass_spatial_pre_int
Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model	Bass_spatial_RKsolver
Creates the folders structure for Bass spatialized model	Bass_spatial_skeleton
Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolation	Bream_ind_dataloader
Seabream bioenergetic individual model differential equations	Bream_ind_equations
Seabream bioenergetic individual model	Bream_ind_main
Postprocess the Seabream indivual bioenergetic model results	Bream_ind_post
Seabream bioenergetic individual model preprocessor	Bream_ind_pre
Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta method	Bream_ind_RKsolver
Creates the folders structure for Seabream individual bioenergetic model	Bream_ind_skeleton
Function that loads forcings data for Seabream population model and performs the interpolation	Bream_pop_dataloader
Seabream bioenergetic population model differential equations	Bream_pop_equations
Function that runs the Monte Carlo simulation for the Seabream population model	Bream_pop_loop
Seabream bioenergetic population model	Bream_pop_main
Postprocess the Bream population bioenergetic model results	Bream_pop_post
Seabream bioenergetic population model preprocessor	Bream_pop_pre
Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta method	Bream_pop_RKsolver
Creates the folders structure for Seabream population model	Bream_pop_skeleton
Function that loads forcings data for Bream spatialized model and performs the interpolation	Bream_spatial_dataloader
Bream bioenergetic spatialized model - spatialization loop	Bream_spatial_loop
Bream bioenergetic spatialized model - spatialization loop	Bream_spatial_main
Postprocess the Bream spatialized model results	Bream_spatial_post
Bream bioenergetic spatialized model preprocessor	Bream_spatial_pre
Bream bioenergetic spatialized model preprocessor - used inside spatialization loop	Bream_spatial_pre_int
Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model	Bream_spatial_RKsolver
Creates the folders structure for Bream spatialized model	Bream_spatial_skeleton
Function that loads forcings data for Clam individual bioenergetic model and performs the interpolation	Clam_ind_dataloader
Clam bioenergetic individual model differential equations	Clam_ind_equations
Clam bioenergetic individual model	Clam_ind_main
Postprocess the Clam individual bioenergetic model results	Clam_ind_post
Clam bioenergetic individual model preprocessor	Clam_ind_pre
Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta method	clam_ind_RKsolver
Creates the folders structure for Clam individual bioenergetic model	Clam_ind_skeleton
Function that loads forcings data for Clam population model and performs the interpolation	Clam_pop_dataloader
Clam bioenergetic population model differential equations	Clam_pop_equations
Function that runs the Monte Carlo simulation for the Clam population model	Clam_pop_loop
Clam bioenergetic population model	Clam_pop_main
Postprocess the Clam population bioenergetic model results	Clam_pop_post
Clam bioenergetic population model preprocessor	Clam_pop_pre
Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta method	Clam_pop_RKsolver
Creates the folders structure for Clam population model	Clam_pop_skeleton
Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolation	ClamF_ind_dataloader
Clam bioenergetic individual model differential equations (alternative version)	ClamF_ind_equations
Clam bioenergetic individual model (alternative version)	ClamF_ind_main
Postprocess the Clam indivual bioenergetic model (alternative version) results	ClamF_ind_post
Clam bioenergetic individual model preprocessor (alternativer version)	ClamF_ind_pre
Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method	ClamF_ind_RKsolver
Creates the folders structure for Clam individual bioenergetic model (alternative version)	ClamF_ind_skeleton
Function that loads forcings data for Clam population model (alternative version) and performs the interpolation	ClamF_pop_dataloader
Clam bioenergetic population model differential equations (alternative version)	ClamF_pop_equations
Function that runs the Monte Carlo simulation for the Clam population model (alternative version)	ClamF_pop_loop
Clam bioenergetic population model (alternative version)	ClamF_pop_main
Postprocess the Clam population bioenergetic model results (alternative model)	ClamF_pop_post
Clam bioenergetic population model (alternative version) preprocessor	ClamF_pop_pre
Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method	ClamF_pop_RKsolver
Creates the folders structure for Clam population model (alternative version)	ClamF_pop_skeleton
Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolation	Mussel_ind_dataloader
Mussel bioenergetic individual model differential equations	Mussel_ind_equations
Mussel bioenergetic individual model	Mussel_ind_main
Postprocess the Mussel indivual bioenergetic model results	Mussel_ind_post
Mussel bioenergetic individual model preprocessor	Mussel_ind_pre
Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method	Mussel_ind_RKsolver
Creates the folders structure for Mussel individual bioenergetic model	Mussel_ind_skeleton
Function that loads forcings data for Mussel population model and performs the interpolation	Mussel_pop_dataloader
Mussel bioenergetic population model differential equations	Mussel_pop_equations
Function that runs the Monte Carlo simulation for the Mussel population model	Mussel_pop_loop
Mussel bioenergetic population model	Mussel_pop_main
Postprocess the Mussel population bioenergetic model results	Mussel_pop_post
Mussel bioenergetic population model preprocessor	Mussel_pop_pre
Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta method	Mussel_pop_RKsolver
Creates the folders structure for Mussel population model	Mussel_pop_skeleton
Function that loads forcings data for Mussel spatialized model and performs the interpolation	Mussel_spatial_dataloader
Mussel bioenergetic spatialized model - spatialization loop	Mussel_spatial_loop
Mussel bioenergetic spatialized model - spatialization loop	Mussel_spatial_main
Postprocess the Mussel spatialized model results	Mussel_spatial_post
Mussel bioenergetic spatialized model preprocessor	Mussel_spatial_pre
Mussel bioenergetic spatialized model preprocessor - used inside spatialization loop	Mussel_spatial_pre_int
Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model	Mussel_spatial_RKsolver
Creates the folders structure for Mussel spatialized model	Mussel_spatial_skeleton
Function that solves the population dynamics equations including discontinuities	Pop_fun